Report for Sequence Feature Glyma07g33730
Feature Type: gene_model
Chromosome: Gm07
Start: 38688198
stop: 38690347
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g33730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49780 AT
Annotation by Michelle Graham. TAIR10: plant U-box 26 | chr1:18429024-18430289 REVERSE LENGTH=421
SoyBase E_val: 0 ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0000151 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
PTHR22849 Panther
WDSAM1 PROTEIN
JGI ISS
PF04564 PFAM
U-box domain
JGI ISS
UniRef100_G7JK27 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JK27_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KM13 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KM13_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g33730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g33730
Paralog Evidence Comments
Glyma02g11480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g33730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g214300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g33730
Coding sequences of Glyma07g33730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g33730.1 sequence type=CDS gene model=Glyma07g33730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTGGGAGTTTAGAACCGTTAGATTTGGGTGTTCACATACCCTACCACTTCCGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACTGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGTCATGGGTCAGCACCGGCAACACCACATGTCCGGTCACACGCGCCACTCTCTCCGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTTGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGATTCTGCCCCTGCTCACCTTCGCCTTTCTTCTCTCCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCTCTCATTGCCTCTCACAACCTTCTCCAGATCCTTCTCCCAATCGTTTTCAACAACGGTTCCGACGAGTTGAGTCACGAGTCGCTCGCGCTGCTCGTTATGTTTCCGCTCGGCGAGTCGGAATGTGCTTCGCTCGCATCTGATTCGATGAAGATTGGCTATTTATCGCGGATGTTGGCGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGGTTGAGATCGTCGTCGTCGGGACGCACTCGCCGGAGTTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCTCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGCCGCCGGCGCGCCGGCGGTGCTCGTGGACCGGCTGGCGGACTTTGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGCGGCGTTTGCAGCGCACGCGCTGACGGTGCCGATGCTGGTAAAGATAATCCTGAAGATCTCCAACCGCGCGACGGAGTACGCCGCTGGTGCGCTGCTCTCGCTGTGCTCGGAGTCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCATGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCGTCGGAAACTCTGACGATTTTGCATGCAGTCAGGTCGTTGTGGTTCCCTTTTGA
Predicted protein sequences of Glyma07g33730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g33730.1 sequence type=predicted peptide gene model=Glyma07g33730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVSTGNTTCPVTRATLSDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSDSAPAHLRLSSLRRLRQLARDSDKNRSLIASHNLLQILLPIVFNNGSDELSHESLALLVMFPLGESECASLASDSMKIGYLSRMLAHNSFDVRVNSAALVEIVVVGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAAHALTVPMLVKIILKISNRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLMQSDCTERAKRKAQMLLKLLRDSWPQDSVGNSDDFACSQVVVVPF*